Twofax - All the controls can affect different midi channels & you can chain controls so moving only one can control multiple parameters on several midi channels, up to 65 according to the manual! The cool thing is that the CC values can be opposite values too so you get a crossfader effect!
Pseen - Don't really use a generic template on the bitstream as different tracks require different things, at least for me anyway. It's very easy to do tho if that's what you want.
Just ref the CC chart with the bitstream config software.
Use tab 'User & Mackie & Logic'.
Change user defined to whatever CC you want.
Now under channel it will say bs3x channel but won't allow you to change it!
Go to Midi Channel position N & change this from 1 to 0.
Now you can input the desired midi channel

Updated CC Chart here with some basic sysex strings. If anyone can tell why they don't work with the MD I'd appreciate it
Cheers
BW7
http://bluewolfse7en.files.wordpress.com/2012/06/elektron-cc-chart_1-1-compiled-by-bw7.pdf